Thursday, October 29, 2015


Notes from the Field: Student Rachel Edwards Writes from the R/V Falcor

    By Rachel Edwards           


Tamu Massif is located within the Shatsky rise
Tamu Massif is located within the Shatsky rise near Japan.
Image courtesy of Schmidt Ocean Institute
http://www.schmidtocean.org/story/show/4551
As we near the end of our journey to Tamu Massif, the expedition to explore the “World’s Largest Single Volcano,” I thought I’d share the learning opportunities I’ve had aboard the R/V Falkor.  At home, I have a quote on my desk that reads “Bite off more than you can chew, then chew it.” This epitomizes my experience as a Schmidt Ocean Institute (SOI) student opportunity recipient.  Before boarding the Falkor, my knowledge and understanding of geophysics, volcanoes, and how a scientific vessel worked was very limited, but the SOI program offered me the chance to gain knowledge through a hands-on field experience of a lifetime. 

The first couple of days took some adjusting as I figured out a routine and my purpose on the R/V Falkor. Ship life is very different from my on-shore life, but the good thing about being on a ship is that making friends is easy since we live, work, eat and have fun together. My schedule is now set and consists of two shifts as a watchstander from 3-6 AM and 3-6 PM where I and my partner am stationed in the control room, keeping a log of specific information in case something goes wrong or the equipment stops working during the surveys. I am also able to see the data streaming in live as we map Tamu Massif and gather information on magnetic anomalies.  Eating, homework, naps/sleep, plus some down time with the science team and the crew when time allows is also part of my routine. After almost four weeks of surveying Tamu Massif, including detours and course changes to avoid bad weather, I’ve learned much sea life. Additionally, learning how technology and equipment on the Falkor function in order to collect good data has been a huge experience. A highlight of this trip for me has been learning how to use the tools needed to address the most fascinating questions in oceanography - in this case the big question is how did Tamu Massif form?

Cruise survey plan
Proposed cruise survey plan.
Image courtesy of Schmidt Ocean Institute
http://www.schmidtocean.org/story/show/4551
As part of the program, students are expected to learn and understand the research being conducted. I am naturally inquisitive, so I find it easy to ask lots of questions to the crew and the science team. The Falkor’s Lead Marine Technician, Leighton Rolley, has been a great mentor in helping me see and participate in different parts of ship life from ship maintenance to learning how to use the science equipment on board such as the Expendable Bathythermograph (XBT) that measures salinity and temperature. These parameters affect the speed of sound through water which affects the bathymetric data readings. Leighton is also testing my computing skills, very necessary in this field, through “homework” assignments that include determining across-track and along-track widths and resolutions of the multi-beam echo sounder data in relation to factors such as water depth and ship speed. One of the best opportunities is being able to network with scientists and other university students on board. My knowledge of volcanos, geophysics, and data collection has increased dramatically since I’m able to learn directly from the experts in the field.


The next best experience on this expedition is seeing so many different things. Besides the science, I saw bioluminescent jellyfish for the first time, flying fish, and some fantastic sunsets and sunrises in the middle of the Pacific Ocean. These make you realize just how enormous our world is and how small we are; there are so many more places to see, people to meet, and things to learn. This expedition has inspired me to continue exploring the world around me, especially the oceans. I highly encourage anyone even slightly interested to apply for the student opportunity. It is literally an experience of a lifetime, and it will push you beyond your comfort zone.  As Captain Bernd says, “Learn to be comfortable with being uncomfortable.”


Friday, October 16, 2015


Notes From the Field: Student Rachel Edwards Writes From a 5 Week Pacific Cruise Onboard the R/V Falkor                 




I am the very fortunate recipient of Schmidt Ocean Institute’s (SOI) Student Opportunity aboard R/V Falkor. This particular cruise is exploring Shatsky Rise’s magnetic anomalies using a magnetometer and mapping the bathymetry using a multi-beam echo-sounder. Shatsky Rise is located about 1,000 miles east of Japan and is home to Tamu Massif, the world’s largest single volcano with an area comparable to that of New Mexico.
Figure 1: On the R/V Falkor in Honolulu's Port 34.

As the selected student, I am neither part of the crew or the scientific team, but I am able to participate in all facets of the expedition. I offer my perspective of the science being conducted as well as what life is like aboard the Falkor by contributing to SOI’s blogs. This experience has been a great opportunity to immerse myself in the world of geophysics and learn about topics I have never studied before.

We have been at sea for about ten days, and I have accrued many educational and life experiences that I never would have acquired at home. Most notably, I had never seen the Pacific Ocean before nor had I been on a ship overnight. Both of those are firmly crossed off the bucket list seeing as how, at the end of this cruise, I will have spent five weeks in the middle of the Pacific!

Daily life on the ship is fairly routine now that we have worked out most of the kinks. There are eight students on board, mostly from the University of Houston, where our Chief Scientist, Dr. Will Sager, teaches and conducts research. One of his former students, a professor of geophysics at Texas A&M University, also sent one of her PhD students to be part of the science team.

Figure 2: The control room where all the magic happens.
There are four, three hour, twice daily shifts in which two students stand watch. My shifts are from 3 to 6 AM and PM. Watch keepers sit in the control room (Fig. 2) and record speed, course over ground, latitude and longitude coordinates of the Falkor, water depth and magnetometer depth every half hour on the hour.

I have been fortunate to tag along with the crew and ask them various questions about what they do on Falkor and how they do it. So far, I have toured the engine room, the bridge, and the deck. The engine room generates the power to move us through the water as well as offer electricity and air conditioning to the interior of the ship. Falkor was previously a fisheries protection vessel under the name Seefalke. When purchased by SOI in 2012, the interior was refitted to make her suitable as a research vessel. The engine was not refitted at that time which now keeps the engineers and fitters busy! Three engineers work round the clock with shifts of eight hours each. At present, one of the four generators on board is getting refit which takes up the time of a fourth engineer. They are aided by two fitters who have experience with welding and working on engines.

If the engine room is the heart of the ship, the bridge is her brain. This is where the captain, chief officer, and navigational officer work. Located near the top, the bridge has a multitude of controls used to control the heading and speed of the ship. Windows are constructed to have a 180 degree angle, giving officers the best perspective to detect any potential hazards while at sea. Night vision is also preserved by complete darkness or by only using red lights throughout the nightshift.

Deck hands work incredibly hard to keep Falkor in top shape. In the words of Captain Bernd Buchner, a “clean ship is a safe ship.” Any leak or signs of rust are dealt with and fixed immediately in order to maintain the integrity of the ship. I spent several day assisting the deck hands clean the ballast and freshwater tanks. Residue in these areas builds up on the tank floors and walls and has to be scrubbed off twice a year. My job comprised of holding the spotlight so they could see exactly where they needed to scrub.

Figure 3: After they no longer needed the spotlight to scrub the freshwater tank, I watched from above (you can see my feet) as Lars and Henrik finished the job.
Marine technicians are those that are in charge of keeping the scientific equipment on board running accurately. They also are in charge of deploying any science equipment that is necessary for a particular cruise such as Maggie the Magnetometer. It was the first time they had deployed that particular piece of equipment, so students just observed as Maggie was deployed. The Expendable Bathythermograph (XBT) is deployed daily, and I have been allowed to both observe and help deploy this equipment. An XBT is used to collect water temperature and a depth of up to 1,000m. Since the speed of sound varies as a function of temperature, the XBT’s temperature profile is inputted into the multi-beam data processor in order to make our sonar measurements more accurate.

Figure 4: Talking to Leighton the Marine Tech while holding a deployed XBT.


Figure 5: Lars and Paul help deploy Maggie the Magnetometer.
Very unexpectedly and unrelated to my acceptance to this expedition is media journalist/outreach coordinator Suraida Nanez-James. She is a TAMUCC alumnus and was a previous researcher at Harte! Suraida was one of the first people I met on board and much to my surprise she was wearing a Corpus Christi t-shirt. She now works at the Texas State Aquarium as the Manager for Distance Learning and Outreach. She conducts outreach by way of live connections to schools around the United States, and I help her with some of them. This is a picture of us after crossing the International Date Line. Captain Bernd held a ceremony marking nearly all of the scientific crew and several of the ship’s crew into the Domain of the Golden Dragon. Suraida is wonderful to work with, and Harte should be proud to have been instrumental in the training of such a scientist!

Figure 6: Suraida and me, the newest members of the Domain of the Golden Dragon
This cruise has been a wonderful, once in a lifetime learning and personal experience. I’ve met people from around the world who I now call friends and future colleagues. A million thanks to Dr. Jim Gibeaut, my advisor, for giving me the time to take advantage of such a great opportunity and to Harte for sponsoring my travel. I am more grateful than I can express. Please also check out SOI’s website for updates and info into the science that is going on: http://www.schmidtocean.org/story/show/4551.

Figure 7: The sunrises, sunsets, and stars viewable from sea are undoubtedly a highlight of this expedition and a great way to start and end my day.

Friday, October 2, 2015


Beach Surveying with Cunningham Middle School Students                 




MS students Melinda Martinez and Michael Rittenhouse assisted Tiffany Caudle from the Bureau of Economic Geology, University of Texas at Austin on October 1, 2015 to engage Cunningham Middle School students in the study of their natural environment. Cunningham Middle School is one of many schools along the Texas coast participating in the Texas High School Monitoring Program sponsored by the Texas General Land Office (GLO).

Michael Rittenhouse teaching students how to measure distance of longshore current (Photo credit: Melinda Martinez).


Students work together to gain a better understanding of dune and beach dynamics on the Texas coast. They learned how to measure the beach-dune topography, map vegetation and shorelines, and observe coastal processes such as wind speed and direction, wave height and period, and longshore transport. Students make several trips throughout the year continuously monitoring specific areas along the barrier island to help contribute to a long-term study of shoreline change along the Texas Gulf coast.

Tiffany Caudle teaching students how to measure the changes in topography using the equipment (Photo credit: Melinda Martinez).

Students from Cunningham participated in a new beach survey on October 1st near Whitecap Blvd. on North Padre island. The new profile is the only one on North Padre island that traverses a sea wall and will provide the students a different perspective on how beach topography changes with sea walls. The study area is also closely monitored by the Texas GLO. Data collected from the student’s efforts is valuable for coastal communities and public awareness.

New beach survey along the sea wall (Photo credit: Melinda Martinez).

Friday, July 24, 2015


Gayanilo elected co-chair of DataONE User's Group                 



Felimon Gayanilo. 
Felimon Gayanilo, Systems Architect with Harte Research Institute, Texas A&M University Corpus Christi was recently nominated and eventually elected to co-chair the DataONE User’s Group (DUG) with Plato Smith of the University of New Mexico during the last DUG Meeting in Asilomar, CA (July 12-13, 2015). The NSF-funded Data Observation Network for Earth (DataONE) will ensure the preservation, access, use and reuse of multi-scale, multi-discipline, and multi-national Earth observational science data via cyberinfrastucture elements and a broad education and outreach program. One way for DataONE to engage its community of partners is through working groups and DataONE User’s Group (DUG).

The DUG is the worldwide community of Earth observation data authors, users and stakeholders that makeup the DataONE partnership communities. It represents the needs and interest of the community and provide guidance that facilitates DataONE in achieving its goals. Mr. Gayanilo and Dr. Smith will serve for two years (2015-2017) before new co-chairs are selected from the growing number of members where major data centers that may include, among others, the National Centers for Environmental Information of NOAA. The Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) of Harte Research Institute, Texas A&M University Corpus Christi is working towards becoming a member node of this network.




Monday, June 1, 2015


Resource Management Codes Improve Texas Coastal Management

By: Diana Del Angel                 



Texas coastal wetlands. Mustang Island, 
Texas.  Photo Credit: Diana Del Angel
Resource Management Codes are assigned to state submerged land tracks and are designed to improve coastal conservation while making the permitting process more efficient and transparent for those proposing activities in Texas’ coastal zone. The Texas coast is a diverse environment, featuring 493 miles of Gulf shoreline and over 8,000 miles of estuarine shoreline. Beaches, reefs, seagrass meadows, bird rookeries, expansive flats and emergent wetlands exist along the shoreline or within the coastal bay systems providing habitat for a wide range of species. Adjacent or concurrent to these sensitive habitats, below the tideline, are submerged lands. These include bay bottoms and ocean floor extending over 10 miles out into the Gulf of Mexico.
Map featuring submerged land tracts with Access codes CF, 
CA, and CC. CF- Limit vehicular access for development 
activities; CA – use existing channels; CC- Dredging of one 
channel may be authorized.

Submerged lands are managed by the Texas General Land Office (GLO) and are available for lease for the benefit of the Texas Permanent School Fund. Leases are available for a variety of purposes, including oil and gas production; solar, wind and geothermal power; agricultural related activities; and commercial development. But to lease these lands, permits must be sought and proposed activities must meet federal and state environmental regulations. In an attempt to simplify the planning and the lease-bidding process, the GLO with the assistance of CMGL has developed a web-based tool featuring Resource Management Codes which are applicable to state submerged tracts.

The two-letter Resource Management Codes (RMCs) are assigned to state-owned tracts in Texas bays and estuaries, and Gulf of Mexico waters, representing development guidelines for activities within the tracts. As an example, Miscellaneous codes indicate the presence of sensitive areas like wetlands, oyster reefs, algal flats and other sensitive areas. Other codes focus on activities like access, navigation, drilling, and dredging; these activities may not be permitted or may require a survey in the vicinity of particular sensitive areas or habitat.

Brach Lupher and Diana Del Angel, part of the
 RMC update team, attend meeting
in Austin Texas April 2014.
Photo courtesy of James Gibeaut.
The codes were originally developed in 1996, using agency recommendations to assign RMC’s to tracts. The 2014 update was a data-driven process using the best available natural resource spatial data to populate the RMC map. RMC’s and sensitive areas were defined and updated where necessary for the development of the new map with the recommendation of various permitting and regulating offices including Texas Parks and Wildlife Department, Texas General Land Office, US Army Corp of Engineers, Texas Historical Commission, and the GLO field offices, U. S. Army Corps of Engineers, among others. The process took 10 months to complete and the team gathered the necessary information through a series of monthly meetings held at the GLO offices in Austin Texas. The RMC’s have been recently used in the latest bidding process (January 2015) and will be updated as new data becomes available for version 2.0 in September 2015.

 RMCs are in place to enhance protection of sensitive natural resources and to assist potential bidders by providing up-to-date information of natural resources and environmental concerns that may be associated with leasing and developing state submerges tracts. In addition, links within the web-tool provide recommendations for minimizing adverse impacts from mineral exploration and development activities to assists bidders in their project planning efforts. The RMC are available at the Texas General Land Office Resource Management Codes website.

RMC Mapping Viewer screen shot. Map shows submerged land tracts; lease sale nominations in red; and two access codes, CA in pink and CF in blue; and  a pop-up window with details of the selected tract.




Friday, May 15, 2015


Melinda Martinez participates in Ocean Exploration Trust internship program aboard the E/V Nautilus

By: Melinda Martinez                



HRI’s MS student, Melinda Martinez, was recently awarded an Ocean Science and Mapping intern position with Ocean Exploration Trust aboard the Exploration Vessel Nautilus. The Ocean Exploration Trust internship program is competitive, awarding a limited number of internship positions each year. One internship position is reserved for a representative of the NOAA’s Cooperative Science Centers. Melinda will be representing NOAA Environmental Cooperative Science Center (ECSC) as an Ocean Science and Mapping intern. Aboard the Nautilus, she will be assisting in data management during dives by recording operational events, taking captures from the ROV cameras, logging samples obtained during dives, and participating in scientific discussions by answering Nautilus viewer questions. While not diving, she will be assisting the lead data manager by compiling and writing dive reports; processing and archiving samples; and creating metadata for dives and processed samples.   




Figure 1. Melinda Martinez and the E/V Nautilus

Melinda will have the opportunity to participate in the Gulf of Mexico cruise from May 13-19, and the California Borderlands from August 11-19. The Gulf of Mexico cruise will be exploring seafloor habitats at mid-slope and lower slope depths, including hard substrate coral habitats, hydrocarbon seeps, mud volcanoes, and brine pools. The California Borderlands cruise will explore previously unstudied regions to improve understanding of the offshore extent of submerged geohazards.

Follow Melinda’s daily blog to learn about her experiences aboard the Nautilus at www.nautilus2015.wordpress.com. You can also watch Nautilus live stream video 24 hours a day at www.nautiluslive.org or join either their Facebook or Twitter accounts for updates on upcoming dives. 

Monday, July 14, 2014


Gayanilo Speaks at 'Fishackathon:Sustainable Fishery Challenge'                 


          
Felimon Gayanilo
Felimon Gayanilo, Systems Architect working on our GRIIDC and GCOOS Data Management projects, was invited as a speaker and mentor to the first ‘Fishackathon: Sustainable Fishery Challenge’ sponsored by the Department of State (http://www.fishackathon.co/). Five areas (Silicon Valley, Boston, Baltimore, New York and Miami) participated in the event that started June 13, and participants used the whole weekend to design, develop and present a prototype of their products. Mr. Gayanilo was hosted by Venture Hive in Miami (http://miamifishackathon.splashthat.com/) with other fisheries experts in the area that had experience working in developing countries. The Secretary’s Office of Global Partnership announced two winners of the event through a Google+ Hangout event (https://plus.google.com/events/c7r9c9325uu26gr1i3id5aav7v8).

The challenges presented to participating software developers were to resolve issues related to implementation of fishing regulations in Ghana and data collection of captured fishery in the Philippines. Mr. Gayanilo, the author of the FAO-ICLARM Fish Stock Assessment Tools (FiSAT; see http://www.fao.org/3/a-y5997e/), a software package that is still in used in a number of developing countries, focused his talks on how data are lost in situations such as those experienced in developing countries. The intent of the talk was to present areas where technology can be introduced to minimize data losses and improve data collection in either collecting statistical data for management of the resources or in monitoring the implementation of fishing regulations.